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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015832870.1_cds_XP_016505038.1_18416
CDS Infomation

[gene=LOC107822968] [db_xref=GeneID:107822968] [protein=probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic] [protein_id=XP_016505038.1] [location=84672..86477] [gbkey=CDS]
Sequence

ATGACTTCTACATCTGCAAATTATAATACTTGGGCTAGAACCCAAAATACTCATCCCTTT
TCACCTTCAACTTCTTATTCTTCTTCTTCAGTTGATTTTTCCCTCCCTACAAAATCAATC
TCCAAGAAAAATCTCACCATTAGAAAAACTAACATCCACTCTGCTTTACAGTCCCCTGCT
GTACTCACTTTCCCAAAACAGAAAAAACAAAATCCAACAATTCCCAACAAACATTTACAG
TCTCAGCCTCAAACTCCTGACTGGAATCTTTTCCAGAGAGCAGCAGCAAAAGCTTTAGAT
ATTGTCGAAAGCGCGTTAGTCTCACACGAACTCCAAAACCCACTTCCTAAAACAGCTGAC
CCACGTGTACAGATCGCCGGCAACTTCGCTCCGGTGCCGGAACAGCCCGTTCGGCATAGT
CTTCCGGTTACAGGGACAATCCCCGATTGCATTAACGGGGTTTATGTCCGTAATGGTGCT
AATCCGCTCTTTGAACCAGTAGCAGGTCACCACCTTTTTGATGGCGACGGCATGATTCAT
GCCGTCACCATCGATAATAGCTCAGTGAGCTATTCTTGCCGTTTCACTGAAACGCAAAGA
TTAGTCCAAGAACGTGAATTGGGTCGCCCTGTTTTTCCAAAAGCCATTGGTGAACTTCAT
GGCCATTCTGGAATTGCGCGACTATTGCTCTTCTACGCTCGTGGACTATTCGGCCTCGTG
GATCATAGCCACGGCATGGGAGTGGCTAATGCCGGATTGGTTTACTTTAACAACAGACTT
TTAGCCATGTCAGAAGATGATGTCCCGTATCAAGTTCAAATCTCGTCTTCTGGTGACCTT
CAAACTGTTGGAAGGTACAATTTTGACGAGCAATTAAAAAGCACAATGATTGCTCACCCG
AAAATCGATCCTGTTTCGGGTGAGCTTTTTGCTTTGAGCTACGACGTAGTTCAAAAGCCT
TACTTGAAGTACTTCAAGTTTTCCACATATGGGAAGAAATCGCCTGATGTCGAAATCCCA
TTAGACGTTCCGACCATGATGCATGATTTTGCTATTACTGAAAATTATGTCGTAATTCCC
GACCAGCAAGTTGTGTTCAAGCTTCAAGAAATGATCAAAGGTGGTTCACCAGTAATTTAT
GACAAAGACAAGAAATCCAGGTTCGGGATTCTACCCAAAAATGCTAAAGATTCGAAGAAT
ATTATTTGGGTAGAATCACCAGAAACGTTCTGTTTTCATTTATGGAATGCTTGGGAAGAG
CCAGAGACAGATGAAGTAGTTGTCATTGGCTCATGCATGACACCACCAGACTCAATTTTC
AACGAATGTAATGAGAATTTGCAGAGTGTTTTGTCCGAAATAAGGCTCAATTTGAAGACC
GGCGAATCGACGAAACGGGCGATAATTTCATCATCAGAACAGGTTAATTTGGAAGCTGGA
ATGGTTAATAGGAACAAACTTGGCCGAAAAACACAATATGCTTATCTTGCAATTGCAGAG
CCATGGCCAAAAGTGTCAGGATTTGCAAAAGTAGACTTATCAACAGGGGAAGTTCAGAAG
TATATGTATGGAGATAAAAGATATGGAGGTGAGCCATTATTTTTACCAAGAAACGTAAAT
TCGGAGAACGAAGATGATGGTTTCATTCTTGCATTTTGCCATGACGAGAAGACATGGAAA
TCAGAACTGCAAATTGTGAATGCTATGACTTTAGAATTGGAGGCTACTGTTAAGCTTCCA
TCTAGAGTTCCATATGGATTTCATGGGACTTTTATTAGCTCAAAGGACTTGCAAAATCAA
GTATAG

Peptide Sequence

PEP ID

XP_016505038.1
PEP Infomation

PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nicotiana tabacum]
Sequence

MTSTSANYNTWARTQNTHPFSPSTSYSSSSVDFSLPTKSISKKNLTIRKTNIHSALQSPA
VLTFPKQKKQNPTIPNKHLQSQPQTPDWNLFQRAAAKALDIVESALVSHELQNPLPKTAD
PRVQIAGNFAPVPEQPVRHSLPVTGTIPDCINGVYVRNGANPLFEPVAGHHLFDGDGMIH
AVTIDNSSVSYSCRFTETQRLVQERELGRPVFPKAIGELHGHSGIARLLLFYARGLFGLV
DHSHGMGVANAGLVYFNNRLLAMSEDDVPYQVQISSSGDLQTVGRYNFDEQLKSTMIAHP
KIDPVSGELFALSYDVVQKPYLKYFKFSTYGKKSPDVEIPLDVPTMMHDFAITENYVVIP
DQQVVFKLQEMIKGGSPVIYDKDKKSRFGILPKNAKDSKNIIWVESPETFCFHLWNAWEE
PETDEVVVIGSCMTPPDSIFNECNENLQSVLSEIRLNLKTGESTKRAIISSSEQVNLEAG
MVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLSTGEVQKYMYGDKRYGGEPLFLPRNVN
SENEDDGFILAFCHDEKTWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFISSKDLQNQ
V

Transcript Sequence

Gene sequence data has not been registered.